Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs11070280 | chr15:40861040 | C/T | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs111527788 | chr12:9808565 | TATA/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs111573699 | chr20:30249664 | G/A | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs11161278 | chr15:26330830 | T/G | 9.28E-14 | 65 | 26.5 | 28.93 | 0.15 | KM Plot |
UVM | rs11161280 | chr15:26330916 | G/A | 9.28E-14 | 65 | 26.5 | 28.93 | 0.15 | KM Plot |
UVM | rs11161281 | chr15:26330931 | G/A | 9.28E-14 | 65 | 26.5 | 28.93 | 0.15 | KM Plot |
UVM | rs11167292 | chr20:30344102 | A/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs11170181 | chr12:52978365 | T/A | 0.000108 | 67 | 26.98 | 21.12 | 7.6 | KM Plot |
UVM | rs111727247 | chr20:30324255 | T/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs111823637 | chr1:114747335 | A/C | 0.000102 | 67 | 27.93 | 24.43 | 7.6 | KM Plot |
UVM | rs111884063 | chr20:30233634 | T/C | 6.36E-5 | 67 | 27.92 | 8.25 | 7.6 | KM Plot |
UVM | rs111924272 | chr20:30240241 | A/G | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs111952628 | chr1:114748184 | G/T | 0.000102 | 67 | 27.93 | 24.43 | 7.6 | KM Plot |
UVM | rs111984920 | chr20:30238177 | C/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs11210443 | chr1:74704513 | T/C | 0.000571 | 65 | 27.92 | 26.13 | 6.77 | KM Plot |